YuzhouChang's repositories
GMB_analysis_LiLab
The code demonstrate the analysis for glioblastoma GBM analysis
GeoMXBatchCorrection
GeoMX data batch correction example
Online_R_learning
Online R learning for applied statistics
BMEngineeR.github.io
my github page
SpaTalk
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
Sex-bias-in-cancer-ScienceImmunology-2022
This is for paper submission
trendsceek
Identify genes with spatial expression trends in single-cell gene expression data
IRISFGM-data
This link provide data for supplementary file
midasHLA
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
SscRNA-viz
Visualization application for spatially structured single-cell RNA-seq data
IRISCEM
developed IRIS-CEM, integrative and interpretation system for co-expression module analysis. IRIS-CEM contains four major steps: (i) data preprocessing and regulatory signal modeling; (ii) co-expression gene module identification; (iii) cell clustering; (iv) co-expression module and differentially expressed gene analysis.
CellTypePrediction
R script for cell type prediction based on CellMarker database and hypergeometric test
Methylation
Methylation Pipeline
BulkRNA-seq
BulkRNAseq pipeline
DESSO
A DL-based framework for sequence and shape motif identification in the human genome