tpm, eff_count, and coverage all zero in contigs.csv
matthewabirk opened this issue · comments
Has anyone else had an issue of the tpm
, eff_count
, and coverage
being zero for all your contigs in the contigs.csv
file?
I suspect this is due to the salmon.log
containing an error:
The alignment group queue pool has been exhausted. 0 extra fragments were allocated on the heap to saturate the pool. No new fragments will be allocated
The snap.log
seems fine.
I have this same problem. Is there a fix for this?