Ben Margetts's repositories
Stan-Hands-on-Answers
3 hands-on R notebooks covering basic linear regression, fitting a model to data simulated from an exponential function, and fitting a differential equation model to data simulated from an exponential function. These exercises were delivered during an introduction to nonlinear mixed effects modelling workshop at the Great Ormond Street Institute of Child Health.
AutoTCR
Repository for the AutoTCR scripts. AutoTCR facilitates automated processing and analysis of next generation sequencing T cell receptor data
BenM1215.github.io
Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
cmv-serology
data and scripts of CMV cross-sectional serological study
CMV_VK_Modelling
Stan CMV viral kinetic models
dagster-university-dec-23
Code for the Dagster University course (December 2023)
example-models
Example models for Stan
PracticalDeepLearningForCoders-2022
My implementation of the material from Practical Deep Learning For Coders (2022, fast.ai).
TCR_Analysis
TCR analysis scripts, Gini coefficient hypothesis testing, TCR subsampling alorithm