Giters
bjmt
/
universalmotif
Motif manipulation functions for R.
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Stargazers:
25
Watchers:
2
Issues:
21
Forks:
8
bjmt/universalmotif Issues
make_DBscores is failing: Error in vapply(all_objects, nrow, integer(1L), USE.NAMES = FALSE)
Updated
2 days ago
Comments count
2
Adding a legend with view_motifs
Closed
2 months ago
Comments count
1
[JOSS REVIEW] No community/contribution guidelines
Closed
2 months ago
Comments count
1
How to merge motifs with variable length of gap
Closed
7 months ago
Comments count
7
Can't run meme with custom alphabet
Closed
2 years ago
Comments count
7
R session aborted / fatal error when running read_homer from a list of motifs
Closed
3 years ago
Comments count
5
validObject_universalmotif(motifs) fails when strand is "*"
Closed
3 years ago
Comments count
2
Option to deprotect `motif` column in universalmotif_df
Updated
4 years ago
Comments count
3
Improve support for metadata-based manipulations
Closed
4 years ago
Comments count
22
update_motif on motifs with 1 extrainfo column gives misnamed results
Closed
4 years ago
error in install
Closed
4 years ago
Comments count
15
new view_motifs() function plots in alphabetical order instead of list input order
Closed
4 years ago
Comments count
2
Cannot get scan_sequences to report p-values
Closed
4 years ago
Comments count
11
importing pwd by read_cisbp
Closed
4 years ago
Comments count
3
read_meme() yields out that "alphabet type cannot be detected" although "ALPHABET= ACGT" is provided
Closed
4 years ago
Comments count
1
altname is dropped during summarise_motif
Closed
4 years ago
read_meme fails when alphabet is DNA/RNA/AA-LIKE or custom
Closed
4 years ago
`create_motif` makes incorrect motif for amino acid sequences
Closed
5 years ago
Comments count
1
shuffle_sequence truncated
Closed
5 years ago
Comments count
2
Error with read_meme
Closed
5 years ago
Comments count
5
Error in convert_motifs for TFBStools-PFMatrixList
Closed
5 years ago
Comments count
10