Sam W's repositories
ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
artic-tools
a set of tools for viral amplicon schemes
climb-covid-outbound-submissions
release scripts for coguk
datapipe
Nextflow implementation of grapevine
elan-nextflow
for data flowing to birmingham
EToKi
all methods related to Enterobase
fieldbioinformatics
The ARTIC field bioinformatics pipeline
map-of-github-data
This repository contains tiles and data for the map of github
Porechop
adapter trimmer for Oxford Nanopore reads
primer-schemes
Primer schemes for real-time genome epidemiology
reticulatus
A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
roz
CLIMB-TRE S3 ingest solution and officious bureaucrat.
scylla
single sample processing
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
varys
A pika based client package for rabbitMQ for use in CLIMB-tree
varys-feedstock
A conda-smithy repository for varys.