Release 1.5.0

[Davy Cats]

• Check outstanding issues on JIRA and Github
• Update all submodules to latest master with: git submodule foreach "git checkout master;git pull; git submodule foreach --recursive 'git fetch'; git submodule update --init --recursive"
• check all submodules are tagged correctly with git submodule
• run tests to confirm to be released version works.
• Generate inputs overview using wdl-aid:
  wdl-aid --strict -t scripts/docs_template.md.j2 pipeline.wdl > docs/inputs.md
• Publish documentation (updateDocs.sh) from develop branch
  • Copy docs folder to gh-pages branch
  • Overwrite existing develop folder with docs folder on gh-pages
  • Push changes to gh-pages branch
• Check latest documentation
  looks fine
• Change current development version in CHANGELOG.md to stable version.
• Run the release script release.sh
  • Check all submodules are tagged
  • Merge the develop branch into master
  • Created an annotated tag with the stable version number. Include changes
    from changelog.md.
  • Confirm or set stable version to be used for tagging
  • Push tag to remote.
  • Merge master branch back into develop.
  • Add updated version number to develop
• Publish documentation (updateDocs.sh) from master branch
  • Copy docs folder to gh-pages branch
  • Rename docs to new stable version on gh-pages
  • Set latest version to new version
  • Push changes to gh-pages branch
• Create a new release from the pushed tag on github
• Prepare the repo for packaging by git checkout master && git submodule update --init --recursive
  • Package the wdl files with wdl-packager --reproducible -a LICENSE -a dockerImages.yml <WDL_FILE>
  • Add the package(s) to the github release. Also add the original WDL file
    as <pipeline>_<version>.wdl following the same naming as the package.
    This alllows for usage of wdl and imports zip with cromwell without
    requiring the user to extract the package.