biodavidjm / artMS

Analytical R Tools for Mass Spectrometry

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Could you please add MSStats removeFewMeasurements argument in the config.yaml?

weixiandeng opened this issue · comments

Hi David,

Thanks for maintaining this amazingly handy package.

I'm wondering if you could also add removeFewMeasurements argument coming from MaxQtoMSstatsFormat() of MSStats in your config.yaml to let your functions know this could be an option?

In some cases, in IP-MS experiment, very few peptides from low abundance protein could be detected, and MS1 quantification only gives one feature to each peptide_charge species. It would be really helpful if you allow people to turn that remove few measurements off sometimes.

Best,
Weixian