biodavidjm / artMS

Analytical R Tools for Mass Spectrometry

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Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'select': object 'org.Mm.eg.db' not found

vivaciousvijaya opened this issue · comments

Hi,

I get the following error in the artmsQuantification step:

ANNOTATING THE RESULTS (adding gene symbols and protein names)
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'select': object 'org.Mm.eg.db' not found

When the quantification step failed I tried installing org.Mm.eg.db using the following lines of code:
if (!require("BiocManager", quietly = TRUE))

  • install.packages("BiocManager")
    

BiocManager::install("org.Mm.eg.db")

After this I re-ran the quantification and got the following error:

ANNOTATING THE RESULTS (adding gene symbols and protein names)
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'select': object 'org.Mm.eg.db' not found

I'm currently using [64-bit] C:\Program Files\R\R-4.1.0 version of R-studio.

I was wondering if you could help me resolve this issue.

Thank you.