Add new isatab template 'cancer'
sellth opened this issue · comments
Thomas commented
Discussed this with @mbenary. Current templates tumor_normal_dna & *_triplets are unsatisfactory in multiple ways, not the least by relying on external config injection for "triplets":
We therefore decided to start a better named and hopefully more useful singular cancer template.
To do
- copy tumor_normal_triplets files as a basis
- adapt is_triplet logic to selectively add transcriptomics assay within the template
- add human readable prompts
- get feedback from @mbenary & @ericblanc20,
- discuss addtional changes (i. e. removing not used protocol parameters)
- remove tumor_normal_* templates?