BIDS Apps's repositories
freesurfer
BIDS app wrapping recon-all from FreeSurfer
hyperalignment
Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.
dockerfile-templates
Dockerfile templates commonly used in BIDS Apps
BrainSuite
BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.
rs_signal_extract
BIDS App for resting state signal extraction using nilearn.
giga_connectome
generate connectome from fMRIPrep outputs
mindboggle
Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data
bids-apps.github.io
This BIDS Apps website has now been integrated to the BIDS website: https://github.com/bids-standard/bids-website.git
matlab-compiler-runtime
Base image with Matlab Compiler Runtime (MCR)
brainiak-srm
This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK
antsCorticalThickness
BIDS App for calculating cortical thickness using ANTs