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BGI-QingDao (BGI-Qingdao)

BGI-QingDao

BGI-Qingdao

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BGI-QingDao 's repositories

TGS-GapCloser

A gap-closing software tool that uses long reads to enhance genome assembly.

Language:C++License:GPL-3.0Stargazers:173Issues:7Issues:79

stlfr2supernova_pipeline

A pipeline to de novo assemble the stLFR reads using Supernova Assembler

Language:ShellStargazers:21Issues:3Issues:4

HAST

HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy

Language:C++License:GPL-3.0Stargazers:18Issues:2Issues:0

MetaTrass

Metagenomics Taxonomic Reads Assembly Single-Species

Language:RebolLicense:GPL-3.0Stargazers:16Issues:2Issues:1

ProcessGroupMonitor

A simple tool to monitor a process group and record its CPU, MEM and time cost.

Language:C++Stargazers:16Issues:3Issues:0

VT3D

VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas

Language:JavaScriptLicense:GPL-3.0Stargazers:13Issues:3Issues:0

GEM3D_toolkit

A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data

Language:PythonStargazers:11Issues:3Issues:2

HicTrioBinning

Language:ShellStargazers:11Issues:3Issues:2

GOMC

Language:RStargazers:8Issues:0Issues:0

Symbiont-Screener

a reference-free tool to separate host sequences from symbionts for error-prone long reads

Language:C++License:GPL-3.0Stargazers:8Issues:3Issues:0

TGS-GapCloser2

A gap-closing software tool that uses long reads to enhance genome assembly.

Language:C++License:GPL-3.0Stargazers:8Issues:0Issues:0

Circle-Map-cpp

rewirte part of Realign module in Circle-Map by c++

Language:C++Stargazers:6Issues:2Issues:1

4D-BioReconX

a bioinformatic framework for reconstructing 4D spatial transcriptomics atlas and spatiotemporal analyses+

Language:Jupyter NotebookLicense:MITStargazers:5Issues:2Issues:0

SpaGRN

A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.

Language:PythonLicense:GPL-3.0Stargazers:5Issues:1Issues:0

stLFR_reads_sim

[Develeping] Reads Simulator of stLFR

Language:C++Stargazers:5Issues:3Issues:1

Lungfish_scRNA_data_analysis

Analysis code for lungfish single cell RNA-seq data

Language:RStargazers:3Issues:0Issues:0

VT3D_Browser

Language:VueStargazers:3Issues:3Issues:0

Circle-Map

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

Language:PythonLicense:MITStargazers:2Issues:1Issues:0

EMA_SF

Language:C++Stargazers:2Issues:1Issues:0

Planarian4D

Language:PythonStargazers:2Issues:2Issues:0

stacpro

STructure based Alignment and Clustering of PROteins

Language:PythonLicense:MITStargazers:2Issues:2Issues:0

strobeQV

This script calculates the quality value (QV) based on strobemers.

Language:C++License:GPL-3.0Stargazers:2Issues:3Issues:0

fish10k

Scripts for fish10k project

Language:PerlLicense:GPL-3.0Stargazers:1Issues:2Issues:0

scMultimodal

Multimodal integration of various types of sequencing data

Language:PythonStargazers:1Issues:1Issues:0

SpaSimulator

SRT data simulator

Language:PythonStargazers:1Issues:1Issues:0

Burnett

evolution

Language:PythonStargazers:0Issues:1Issues:0

Module_completeness

Checks if the given module is complete

Stargazers:0Issues:0Issues:0

SpaGRN_HomePage

The homepage of SpaGRN project

Language:VueStargazers:0Issues:0Issues:0

stereopy

A toolkit of spatial transcriptomic analysis.

License:MITStargazers:0Issues:0Issues:0

ZebrafishHeartRegeneration_project

All scripts for project: zebrafish heart regeneneration

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:0Issues:2Issues:0