BenCaiello's repositories
simpledeepcell
This is a mini-package intended for publication on pip that contains directly copied code from deepcell-tf / deepcell-toolbox, but only the portions needed to run Mesmer, as required by steinbock.
Language:PythonNOASSERTION000
MyFrozenFlowSOM
The complete FlowSOM package known from R, now available in Python! -- For my PALMETTOBUG project -- needs to eventually be on pip (whether by me in the last resort or by a compatible, official update by the saesys lab that places it on pip)
GPL-3.0000
IMC_Denoise_integrated_to_steinbock
IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications
REDSEA_python_steinbock_Mesmer_masks
Python script for REDSEA with new Steinbock / DeepCell masks
Language:Jupyter Notebook000
BenCaiello
Config files for my GitHub profile.
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