BEDApub's repositories
bios-to-go
Static files of the BIOS, aka Bioinfo-C, library
HBVouroboros
HBVouroboros automates sequencing-based HBV genotyping and expression profiling
PMDA-Summer-School
Public website of Roche PMDA Summer School
MelanomaCITResponse_scRNAseq_TILandPBMC_publication
This repository includes notebooks utilized to produce results for the publication "Myeloid-T cell interplay, cell state transitions and checkpoint inhibitor response in melanoma"
metadata-registration-api
A flask microservice to register and manage metadata via an API.
ribiosGSEA
Functions for gene-set analysis of various kinds supported by ribios
ribiosPlot
Data transformation and visualization with the ribios suite
ribiosScripts
Rscripts as command-line tools from the corresponding repository on BEDA github.
BP40087_paper_supplementary_code
Supplementary source code related to the clinical trial BP40087
CD8-immune-phenotype-paper-supplementary
Supplementary source code for the CD8 immune phenotype publication
ribiosAnnotation
Annotate features (genes, mRNAs, proteins, ...) with ribios
ribiosExpression
Data structure and functions for gene expression analysis
ribiosMath
Mathematical objects and functions in the ribios software suite
ribiosUtils
The ribiosUtils package, a swiss-army knife for bioinformatics and computational biology tasks in drug discovery