bcgsc / ntHits

Identifying repeats in high-throughput sequencing data

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Wish list :)

warrenlr opened this issue · comments

commented
  • output ALL kmers (such that nthits could be used with LINKS)
  • gapped seed/distance option
  • counting BF (reporting total kmer count from all reads)
  • slice (robust, non-repeat kmers)

Reopening for new requests