basmith89

biocode

Bioinformatics code libraries and scripts

covid

Tracking Coronavirus Growth

manim

Animation engine for explanatory math videos

ggthemr

Themes for ggplot2.

hrbrthemes

:lock_with_ink_pen: Opinionated, typographic-centric ggplot2 themes and theme components

gfftools

Perl scripts for working with the GFF format

tidyverse_talk

Why and how you should use tidyverse tools

night-owlish

🌙🦉 An RStudio, tmThemes, and Ace editor adaptation of @sdras' Night Owl VS Code theme…

enveomics

Scripts and libraries for Environmental Genomics

ANI

Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes

multi-metagenome

Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

shovill

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

Recycler

This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

BRIGAD3

D3 and Vue component for visualization of bacterial genome assemblies from nanopore sequence data

prezto

The configuration framework for Zsh

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

abe487

mmseq

Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads