Ben Ainscough's repositories

bam-readcount

count DNA sequence reads in BAM files

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bamtools

C++ API & command-line toolkit for working with BAM data

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bioconda-recipes

Conda recipes for the bioconda channel.

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civic-client

Web client for CIViC: Clinical Interpretations of Variants in Cancer

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civic-server

Backend Server for CIViC Project

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convert_zero_one_based

Python CLI to convert between zero and one based genomic coordinate systems

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webcrawler

web crawler project for BYU CS 240

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data-science-ipython-notebooks

Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines. https://bit.ly/data-notes

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dgi-db

Rails frontend to The Genome Institute's drug gene interaction database.

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myvariant.info

MyVariant.info: Variant Annotation as a Service

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