baigal628

Tutorial_UploadDataToEGA

This is a step by step illustration of how I uploads data to EGA

addseq

Angelicin modification based long-read epigenetic profiling method

baigal628.github.io

Personal Webpage

bioinfo-combio

The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/

CHIPS

A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data

cidc-ngs-pipeline-api

Specifications and documentation related to CIMAC-CIDC NGS pipelines: WES, RNAseq, TCRseq, ATACseq

computation_wiki

Tommy's computation wiki

liulab-dfci.github.io

Know more about Shirley Liu lab at

machine-learning-articles

🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.

MAESTRO

Single-cell Transcriptome and Regulome Analysis Pipeline

MAESTRO_documentation

MAESTRO documentation website

miniMAESTRO

A minimal version if MAESTRO which only support pre-processing steps.

musicvisualR

A multi-sample single-cell data visualization toolkit

slurmpy

submit jobs to slurm in Odyssey HPC

modbamvisualization

Visualizing modifications on .bam file

NGS_DataAnalysis_Maize-Corn-

pyflow-single-cell

single-cell RNAseq ATACseq processing pipeline

PyMOL_Protein-3D-Structure-Display

This is a bioinformatic project that uses PyMOL to regenerate protein 3-D structure and then mark conserved sequences.

RIMA_pipeline

RNA-seq_Differential_Expression

This Tutorial Provides a differential gene expression analysis workflow based on Salmon and DESeq2.

scRNA_Pipeline

starter-hugo-academic

visualizirr