Joaquin Dopazo

Joaquin Dopazo's repositories

SMAca

SMN1 copy-number and sequence variant analysis from next generation sequencing data

Language:PythonGPL-3.021 8 4

MIGNON

Mechanistic integrative analysis of RNA-Seq data

Language:wdlMIT7 9 1

hipathia

Signaling pathway model

Language:R6 14 1

CSVS

Population Variant Server

Language:JavaScriptGPL-2.0500

impuSARS

Software tool for the imputation of whole-genome SARS-CoV-2 sequences.

Language:ShellMIT4 7 2

metagenomic-crc

Language:HTMLMIT4 70

metabolizer

Web tool to analyze transcriptomic (and mutational) data in the context of metabolic pathways

Language:HTML2 14 1

signalization_prior_knowledge_based_nn

Language:Jupyter Notebook200

iva

Interactive Variant Analysis tool, forked from OpenCB https://github.com/opencb/iva, documentation at http://docs.opencb.org/display/iva

Language:HTMLApache-2.0100

ivae_scorer

Language:Jupyter Notebook1 50

MechACov

Language:TypeScriptGPL-3.01 60

Metabolica

Language:R000

SPACNACS

Language:JavaScript060

cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

Language:JavaApache-2.0060

drexml-retinitis

Language:RMIT000

hipathia_web

Web interface to HiPathia

Language:HTMLGPL-3.0000

jsorolla

JSorolla is a JavaScript Library for biological and genomic data visualization

Language:HTMLApache-2.0070

mmp-cancer

Backend services for MMP-Cancer

Language:Java000

mmp-cancer-client

Frontend for MMP-Cancer

Language:TypeScriptLGPL-2.1050

network-viewer

Language:HTMLGPL-3.0080

ngscat2

Improved version of Next Generation Sequencing data Capture Assessment Tool (ngsCAT)

Language:Python04 1

opencga

An Open Computational Genomics Analysis platform for big data processing and analysis in genomics

Language:JavaApache-2.0060

OpenEBench_CIBERER

000

pathway-viewer

Code for pathway visualization and management

Language:HTMLGPL-3.0000

SFtool

Secondary Findings tool

Language:Python000

sigprimednet

Language:Jupyter Notebook000

SpPGS

Language:NextflowMIT000

sptest

Language:HiveQL060

stevia-elements

Language:HTMLGPL-3.0080

TCGA_SARC

Language:R000