Ayush Pandey's repositories
nonlinear_control
Nonlinear control tools in Python (feedback linearization, controllability, etc.)
AutoReduce
Python based automated model reduction tool for SBML models
integrase-excisionase-characterization
Data and models repository for paper on "Characterization of integrase and excisionase activity in cell-free protein expression system using a modeling and analysis pipeline"
BioCRNPyler
A modular compiler for biological chemical reaction networks
biosysdesign
Course Webpage for "Introduction to Biological System Design"
hvalidation
Hierarchical validation for biological system modeling
iwbda_workshop2_data
Data for IWBDA 2021 workshop on Bioscrape and AutoReduce
ode_solvers
Benchmarking Python ODE solvers for biological models
webpage-track
A Github repository that tracks changes and records data for my personal webpage.
control_ratio_cells
Simulations for bioRxiv paper - Control of density and composition in an engineered two-member bacterial community
txtlsim-python
Cell-free simulation toolbox in Python
active2passive
Passive approximations for active systems
ayush9pandey
About me
bioscrape-edit
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
BioSIMI
BioSIMI Modeling framework serving for input/output modeling of interconnected biomolecular systems
biosysid
Python toolbox for system identification of biological systems.
control-Perf-Est-Tradeoff
Project on "The tradeoff between observation accuracy and performance in control systems"
DACdenoising
Simulation of DAC noise and noise mitigation strategies
digital_control
Digital Control class Autumn 2016, IIT Kharagpur
interlab-modeling
Modeling of biological circuits developed in the interlab integration study of Build-A-Cell
PURE_CRN_models
Contains all Python scripts used to simulate protein expression and plot figures seen in the paper "A chemical reaction network model of PURE" by Zoila Jurado, Ayush Pandey, and Richard M. Murray. Additionally, all simulation runs and experimental results are included.
toggle_switch
Python code for nonlinear analysis of toggle switch biological circuit.
txtlsim
Cell-free expression modeling toolbox for MATLAB