AuReMe

AUtomated REconstruction of MEtabolic models

http://aureme.genouest.org/

AuReMe's repositories

metage2metabo

From annotated genomes to metabolic screening in large scale microbiotas

Language:Jupyter NotebookLGPL-3.047 6 48

mpwt

Pathway Tools multiprocessing wrapper (for PathoLogic).

Language:PythonLGPL-3.012 5 65

emapper2gbk

Convert GFF, fastas, annotation table and species name into Genbank.

Language:PythonLGPL-3.010 3 15

aucome

Automatic Comparison of Metabolism

Language:PythonGPL-3.04 2 2

padmet

Python library for hAndling metaData of METabolism.

Language:PythonGPL-3.04 4 4

esmecata

From taxonomic affiliations to annotated proteins using UniProt database.

Language:PythonGPL-3.02 3 8

mpwt-docker

A dockerfile for multiprocessing Pathway-Tools.

Language:Dockerfile2 40

aureme_docker

Language:Makefile1 5 3

Ontosunburst

Sunburst representation of ontologies

Language:HTMLGPL-3.0100

padmet-utils

Language:PythonGPL-3.01 40

wiki-metabolic-network

Language:PHPGPL-3.01 30

aureme

Language:PythonGPL-3.003 1

HoloInteract

Study interactions hosts and microorganisms at metabolic level.

Language:HTMLMIT000

aucomana

Language:PythonGPL-3.0000

MeneVal

Language:PythonGPL-3.0000

mpwt-singularity

Singularity recipe for Pathway-Tools and mpwt.

Language:Singularity010

prolipipe

The prolific pipeline is about genome annotation and metabolic pathway reconstruction. From .fasta genomes, it enables to find if strains of bacteria are theorically able to produce metabolites

Language:PythonGPL-3.0000