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asyml / ForteHealth

The project is in the incubation stage and still under development. ForteHealth is a flexible and powerful ML workflow builder for biomedical and clinical scenarios. This is part of the CASL project: http://casl-project.ai/

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Missing "setup.py" when pip install forte-wrappers from git

KiaLAN opened this issue · comments

commented

I am trying the example in examples/mimic_iii/. When I follow the README and run this command:

pip install git+https://git@github.com/asyml/forte-wrappers#egg=forte-wrappers[elastic,spacy]

pip shows this error:

ERROR: File "setup.py" not found for legacy project forte-wrappers[elastic,spacy] from git+https://****@github.com/asyml/forte-wrappers#egg=forte-wrappers[elastic,spacy].

It seems that setup.py is missing in forte-wrapper repo.

However, installing from pypi works well. Maybe we need to replace the above command with this one:

pip install forte.spacy forte.elastic
commented

Python and pip versions:

Python 3.6.13 :: Anaconda, Inc.
pip 21.2.2

commented

Hi @KiaLAN, thank you for bringing this up. We have recently made changes to our Forte-wrappers repository and its packaging structure, which is the root cause of the issue that you mention. I will be pushing a change(new command) to resolve this. I shall update the status of this issue, as soon as that's done:)