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asyml / ForteHealth

The project is in the incubation stage and still under development. ForteHealth is a flexible and powerful ML workflow builder for biomedical and clinical scenarios. This is part of the CASL project: http://casl-project.ai/

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Generate ontology for AbbreviationDetection and HyponymDetection

Piyush13y opened this issue · comments

commented

Is your feature request related to a problem? Please describe.
According to #14, we should be defining the ontologies that will be required for this processor. A new parent ontology has to be defined under Token. Abbreviation would be the ontology name and there will be an attribute within this, namely long_form (as string). These can then be used to store coding information as such:

example input:
"Spinal and bulbar muscular atrophy (SBMA) is an
inherited motor neuron disease caused by the expansion
of a polyglutamine tract within the androgen receptor (AR).
SBMA can be caused by this easily."

example output ontology:

- Abbreviation (span 'SBMA')
  - long_form "Spinal and bulbar muscular atrophy"

- Abbreviation (span 'AR')
  - long_form "androgen receptor"

HyponymDetection....

-Link
  - Hyponym
    - hyponym_link

For example: "Keystone plant species such as fig trees are good for the soil."

Hyponym:
hyponym_link: such_as
Parent: Keystone plant species
Child: fig trees