Lars Arvestad's repositories
da3018_vt20
Code, data, etc for the spring semester round of DA3018
da3018_vt2023_repo
Course materials for spring 2023
da3018_vt21
Code repository for DA3018 spring 2021
modelmatcher
Rapid identification of evolutionary models
robinson_foulds
A simple command line tool for computing the Robinson-Foulds distance given two trees, using the ETE toolkit.
modelestimator-v2
Infer amino-acid replacement-rate matrices from protein multi-sequence alignments. Fast!
arvestad.github.io
My adaption of the Github Pages template for academic personal websites, forked from academicpages/academicpages.github.io
CI_Demo
A dummy repo to show how to use a Github actions workflow for continuous integration
eddie
Discord bot for managing ProgTek and similar
fast-neighborhood-correlation
Optimized implementation of Neighborhood Correlation for bioinformatics sequence analysis. This thesis project compares Python, custom C++, and Eigen C++ implementations for performance and accuracy.
GenFamClust
Jesper Holms version of GenFamClust
genomstromning
Analysera hur det går för våra studenter
gpt4all
gpt4all: a chatbot trained on a massive collection of clean assistant data including code, stories and dialogue
IGGB
Genome Browser, that takes user input to display shared genomes from Species, or homologs. A project by Danilo Catalan Canales.
neighborhood_correlation
An update of Durand and Joseph's Neighborhood Correlation tool for assessing protein sequence similarity
participation
Compute expected number of participants based on self-reported probability of participation.
personnummer
Validate Swedish personal identity numbers
snc
My version of Neighborhood Correlation sequence comparisons
tree_matching_distance
An implementation of the tree distance metric suggested by Lin, Rajan, and Moret, at ISBRA 2011.