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arfc / arfc.github.io

Holds the research group website.

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Invalid byte sequence error when building on Ubuntu 22.04

yardasol opened this issue · comments

commented

This repository's issues are reserved for feature requests, and bug reports, and questions.

I'm submitting a ...

  • bug report
  • feature request
  • question

Expected Behavior

The website builds without issue

Actual Behavior

$ jekyll serve --trace
Configuration file: /home/ooblack/projects/arfc.github.io/_config.yml
            Source: /home/ooblack/projects/arfc.github.io
       Destination: /home/ooblack/projects/arfc.github.io/_site
 Incremental build: disabled. Enable with --incremental
      Generating... 
    Jekyll-scholar: Option `use_raw_bibtex_entry` is no longer supported
  Liquid Exception: invalid byte sequence in US-ASCII in /home/ooblack/projects/arfc.github.io/_layouts/publications.html
/home/ooblack/gems/gems/bibtex-ruby-6.0.0/lib/bibtex/lexer.rb:220:in `scan_until': invalid byte sequence in US-ASCII (ArgumentError)
	from /home/ooblack/gems/gems/bibtex-ruby-6.0.0/lib/bibtex/lexer.rb:220:in `parse_meta'
	from /home/ooblack/gems/gems/bibtex-ruby-6.0.0/lib/bibtex/lexer.rb:180:in `analyse'
	from bibtex.y:110:in `parse'
	from /home/ooblack/gems/gems/bibtex-ruby-6.0.0/lib/bibtex/bibliography.rb:67:in `parse'
	from /home/ooblack/gems/gems/jekyll-scholar-7.0.0/lib/jekyll/scholar/utilities.rb:193:in `bibliography'
	from /home/ooblack/gems/gems/jekyll-scholar-7.0.0/lib/jekyll/scholar/utilities.rb:219:in `entries'
	from /home/ooblack/gems/gems/jekyll-scholar-7.0.0/lib/jekyll/scholar/utilities.rb:838:in `cited_entries'
	from /home/ooblack/gems/gems/jekyll-scholar-7.0.0/lib/jekyll/scholar/tags/bibliography.rb:20:in `render'
	from /home/ooblack/gems/gems/liquid-4.0.3/lib/liquid/block_body.rb:103:in `render_node_to_output'
	from /home/ooblack/gems/gems/liquid-4.0.3/lib/liquid/block_body.rb:91:in `render'
	from /home/ooblack/gems/gems/liquid-4.0.3/lib/liquid/template.rb:208:in `block in render'
	from /home/ooblack/gems/gems/liquid-4.0.3/lib/liquid/template.rb:242:in `with_profiling'
	from /home/ooblack/gems/gems/liquid-4.0.3/lib/liquid/template.rb:207:in `render'
	from /home/ooblack/gems/gems/liquid-4.0.3/lib/liquid/template.rb:220:in `render!'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/liquid_renderer/file.rb:39:in `block (3 levels) in render!'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/liquid_renderer/file.rb:59:in `measure_counts'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/liquid_renderer/file.rb:38:in `block (2 levels) in render!'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/liquid_renderer/file.rb:63:in `measure_bytes'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/liquid_renderer/file.rb:37:in `block in render!'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/liquid_renderer/file.rb:70:in `measure_time'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/liquid_renderer/file.rb:36:in `render!'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/renderer.rb:131:in `render_liquid'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/renderer.rb:194:in `render_layout'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/renderer.rb:163:in `place_in_layouts'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/renderer.rb:93:in `render_document'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/renderer.rb:63:in `run'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/site.rb:547:in `render_regenerated'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/site.rb:539:in `block in render_pages'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/site.rb:538:in `each'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/site.rb:538:in `render_pages'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/site.rb:211:in `render'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/site.rb:80:in `process'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/command.rb:28:in `process_site'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/commands/build.rb:65:in `build'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/commands/build.rb:36:in `process'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/command.rb:91:in `block in process_with_graceful_fail'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/command.rb:91:in `each'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/command.rb:91:in `process_with_graceful_fail'
	from /home/ooblack/gems/gems/jekyll-4.2.2/lib/jekyll/commands/serve.rb:86:in `block (2 levels) in init_with_program'
	from /home/ooblack/gems/gems/mercenary-0.4.0/lib/mercenary/command.rb:221:in `block in execute'
	from /home/ooblack/gems/gems/mercenary-0.4.0/lib/mercenary/command.rb:221:in `each'
	from /home/ooblack/gems/gems/mercenary-0.4.0/lib/mercenary/command.rb:221:in `execute'
	from /home/ooblack/gems/gems/mercenary-0.4.0/lib/mercenary/program.rb:44:in `go'
	from /home/ooblack/gems/gems/mercenary-0.4.0/lib/mercenary.rb:21:in `program'
	from /home/ooblack/gems/gems/jekyll-4.2.2/exe/jekyll:15:in `<top (required)>'
	from /home/ooblack/gems/bin/jekyll:25:in `load'
	from /home/ooblack/gems/bin/jekyll:25:in `<main>'

I initially thought that Jekyll was having trouble rendering the raw bibtex (use_raw_bibtex_entry is no longer supported), however after downgrading both jekyll and jekyll-scholar to versions that would support this option, I ran into the same issue.

Steps to Reproduce the Problem

  1. Checkout yardasol-patch-1
  2. Run jekyll serve

Specifications

  • Version:
    • jekyll 4.2.2
    • ruby 3.0.2p107
    • gem 3.3.5
    • GNU Make 4.3
    • gcc 11.2.0
  • Platform: Ubuntu 22.04

How can this issue be closed?

This issue can be closed when a PR exists that makes changes that allow the website to build.

commented

@munkm can you try to reproduce? I wonder if it's an OS thing.

commented

I'll try it when I get a chance!

commented

@munkm bump

commented

This is relevant to #247

commented

On my machine I am able to build and preview the site. Here are the commands I used:

$rake generate

Configuration file: /Users/madicken/repos/arfc/arfc.github.io/_config.yml
    Jekyll-scholar: Option `use_raw_bibtex_entry` is no longer supported

$jekyll serve

Configuration file: /Users/madicken/repos/arfc/arfc.github.io/_config.yml
            Source: /Users/madicken/repos/arfc/arfc.github.io
       Destination: /Users/madicken/repos/arfc/arfc.github.io/_site
 Incremental build: disabled. Enable with --incremental
      Generating...
    Jekyll-scholar: Option `use_raw_bibtex_entry` is no longer supported
                    done in 3.703 seconds.
 Auto-regeneration: enabled for '/Users/madicken/repos/arfc/arfc.github.io'
    Server address: http://127.0.0.1:4000/
  Server running... press ctrl-c to stop.

I am using rvm to manage ruby versions. I haven't updated ruby in a while, so I'm using ruby-2.7.2, rake version 13.0.1, and jekyll 4.2.0