Anthony Cillo's repositories
celltalker
Inference of cell-cell communication from single-cell RNAseq data
singleseqgset
Gene set enrichment analysis for single-cell RNAseq data
circletime
R package for cyclical pseudotime
distdimscr
High-dimensional distance metrics for scRNAseq
auto_workflow_scrnaseq
Simple automated workflow for scRNAseq analysis
Language:R000
covid_analyses
Gene-module based analyses of COVID-19 immune signatures
MIT000
knitr
A general-purpose tool for dynamic report generation in R
Language:R000
low_level_processing
Low-level processing of scRNAseq data from 10X and Illumina
Language:Shell000
mammatus_slurm_10x
Snakemake pipeline for processing 10x scRNAseq data on a SLURM cluster
Language:PythonMIT000
workflow_demo
This repository is intended to use as a demo about how I organize my research projects: from data to manuscript.
MIT000