anuragraj

awesome-proteomics

List of software and databases for proteomics.

AI-Expert-Roadmap

Roadmap to becoming an Artificial Intelligence Expert in 2022

alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.

anuragraj

funR

Theses are fun projects in generation of art and images in R language.

Perl-Codes

Perl codes for various purposes

PgxSAVy

A tool for quality control and annotation of variant peptides after FDR in proteogenomics

anuragrajv2.github.io

Repo for updated website

CKG

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

curriculum-notebooks

Jupyter notebooks for our Summer Experience and Club Curriculum.

deep_learning_in_proteomics

A list of tools on proteomics using deep learning

DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling

faceswap

Deepfakes Software For All

Lorikeet

Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.

OmicLearn

🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data

OmicLoupe

Understanding expression across comparisons and datasets through interactive visualization

oncoEnrichR

Cancer-dedicated gene set interpretation

openalex-gui

Demo frontend for OpenAlex

OpenReadingFrame

Perl tool for three frame translation of DNA sequences

PANOPLY

Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)

philosopher

A complete toolkit for shotgun proteomics data analysis

photography

A free online portfolio website to showcase your photos.

proBatch

Tools for Batch Effects Diagnostics and Correction

proms

protein markers selection

sage

Proteomics searching so fast it feels like magic

single-cell-training

Website hosted at https://sib-swiss.github.io/single-cell-training/latest/

spectrum_utils

Python package for efficient MS/MS spectrum processing and visualization

tidytuesday

Code snippets for weekly #tidytuesday project

Useless_R_functions

Useless R Functions. That's it