pybind11 not installed error
PetarMilevski opened this issue · comments
Hi Steve, how are you going?
I cloned the latest anuga on my ubuntu 20.04lts box and did sudo bash anuga_core/tools/install_ubuntu_20_04.sh to install and this error occurred. Tried this python -m pip install pybind11, it says its installed but i keep getting the error.
Any ideas??
Building wheel for meshpy (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/petar/anuga_env/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-wm9zkzsj/meshpy/setup.py'"'"'; __file__='"'"'/tmp/pip-install-wm9zkzsj/meshpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gqp4dbqn
cwd: /tmp/pip-install-wm9zkzsj/meshpy/
Complete output (20 lines):
---------------------------------------------------------------------------
Pybind11 is not installed.
---------------------------------------------------------------------------
Very likely, the build process after this message will fail.
Simply press Ctrl+C and type
python -m pip install pybind11
to fix this. If you don't, the build will continue
in a few seconds.
[1] https://pybind11.readthedocs.io/en/stable/
---------------------------------------------------------------------------
Continuing in 1 seconds...
WARNING: The wheel package is not available.
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: setup.py --help [cmd1 cmd2 ...]
or: setup.py --help-commands
or: setup.py cmd --help
error: invalid command 'bdist_wheel'
----------------------------------------
ERROR: Failed building wheel for meshpy
Running setup.py clean for meshpy
^CERROR: Operation cancelled by user
petar@petar:~$ python -m pip install pybind11
Requirement already satisfied: pybind11 in ./.local/lib/python3.8/site-packages (2.10.0)
Hi Peter,
Seems like there is a problem with installing meshpy.
Try installing meshpy via
python -m pip install meshpy
and see if that works.
Probably the installation script needs some work.
Cheers Steve
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…________________________________
From: Petar Milevski ***@***.***>
Sent: Wednesday, August 24, 2022 8:19:44 AM
To: anuga-community/anuga_core ***@***.***>
Cc: Subscribed ***@***.***>
Subject: [anuga-community/anuga_core] pybind11 not installed error (Issue #24)
Hi Steve, how are you going?
I cloned the latest anuga on my ubuntu 20.04lts box and did sudo bash anuga_core/tools/install_ubuntu_20_04.sh to install and this error occurred. Tried this python -m pip install pybind11, it says its installed but i keep getting the error.
Any ideas??
Building wheel for meshpy (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/petar/anuga_env/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-wm9zkzsj/meshpy/setup.py'"'"'; file='"'"'/tmp/pip-install-wm9zkzsj/meshpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gqp4dbqn
cwd: /tmp/pip-install-wm9zkzsj/meshpy/
Complete output (20 lines):
Pybind11 is not installed.
Very likely, the build process after this message will fail.
Simply press Ctrl+C and type
python -m pip install pybind11
to fix this. If you don't, the build will continue
in a few seconds.
[1] https://pybind11.readthedocs.io/en/stable/<https://aus01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpybind11.readthedocs.io%2Fen%2Fstable%2F&data=05%7C01%7Cstephen.roberts%40anu.edu.au%7C7a24f2887ca149ff4f4508da8559c7b8%7Ce37d725cab5c46249ae5f0533e486437%7C0%7C0%7C637968917892263914%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=0s82FMADRGmUqZUpbflAtnNrQVRYNch82VVP9fIkvZs%3D&reserved=0>
Continuing in 1 seconds...
WARNING: The wheel package is not available.
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: setup.py --help [cmd1 cmd2 ...]
or: setup.py --help-commands
or: setup.py cmd --help
error: invalid command 'bdist_wheel'
ERROR: Failed building wheel for meshpy
Running setup.py clean for meshpy
^CERROR: Operation cancelled by user
***@***.***:~$ python -m pip install pybind11
Requirement already satisfied: pybind11 in ./.local/lib/python3.8/site-packages (2.10.0)
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Hi Petar,
Another possible problem, the install script installs everything into a python env called anuga_env.
So you have to activate that environment via a command
source anuga_env/bin/activate
from your home directory. Your linux prompt should show that you are using the anuga_env environment. For instance my prompt looks like
(anuga_env) ***@***.***:~/anuga_core$
Then you should be able to check if pybind11 is installed in this environment. And if not install pybind11 via
pip install pybind11
and then try to install meshpy via
pip install meshpy
Cheers
Steve
==============================
Emeritus Prof Stephen Roberts
Mathematical Sciences Institute
Hanna Neumann Building #145
The Australian National University
Canberra, ACT 2600 AUSTRALIA
T: +61 2 61254445 | E: ***@***.***
CRICOS Provider: 00120C
…________________________________
From: Petar Milevski ***@***.***>
Sent: Wednesday, 24 August 2022 8:19 AM
To: anuga-community/anuga_core ***@***.***>
Cc: Subscribed ***@***.***>
Subject: [anuga-community/anuga_core] pybind11 not installed error (Issue #24)
Hi Steve, how are you going?
I cloned the latest anuga on my ubuntu 20.04lts box and did sudo bash anuga_core/tools/install_ubuntu_20_04.sh to install and this error occurred. Tried this python -m pip install pybind11, it says its installed but i keep getting the error.
Any ideas??
Building wheel for meshpy (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/petar/anuga_env/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-wm9zkzsj/meshpy/setup.py'"'"'; file='"'"'/tmp/pip-install-wm9zkzsj/meshpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gqp4dbqn
cwd: /tmp/pip-install-wm9zkzsj/meshpy/
Complete output (20 lines):
Pybind11 is not installed.
Very likely, the build process after this message will fail.
Simply press Ctrl+C and type
python -m pip install pybind11
to fix this. If you don't, the build will continue
in a few seconds.
[1] https://pybind11.readthedocs.io/en/stable/<https://aus01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpybind11.readthedocs.io%2Fen%2Fstable%2F&data=05%7C01%7Cstephen.roberts%40anu.edu.au%7C7a24f2887ca149ff4f4508da8559c7b8%7Ce37d725cab5c46249ae5f0533e486437%7C0%7C0%7C637968917892263914%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=0s82FMADRGmUqZUpbflAtnNrQVRYNch82VVP9fIkvZs%3D&reserved=0>
Continuing in 1 seconds...
WARNING: The wheel package is not available.
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: setup.py --help [cmd1 cmd2 ...]
or: setup.py --help-commands
or: setup.py cmd --help
error: invalid command 'bdist_wheel'
ERROR: Failed building wheel for meshpy
Running setup.py clean for meshpy
^CERROR: Operation cancelled by user
***@***.***:~$ python -m pip install pybind11
Requirement already satisfied: pybind11 in ./.local/lib/python3.8/site-packages (2.10.0)
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Hi Steve, so did all that and still the same issue. its really odd because
i did not have this issue when i installed on th ePC at the beginning of
the year.
I'll just continue to use the previous install.
regard
…On Wed, Aug 24, 2022 at 10:54 AM Stephen Roberts ***@***.***> wrote:
Hi Petar,
Another possible problem, the install script installs everything into a
python env called anuga_env.
So you have to activate that environment via a command
source anuga_env/bin/activate
from your home directory. Your linux prompt should show that you are using
the anuga_env environment. For instance my prompt looks like
(anuga_env) ***@***.***:~/anuga_core$
Then you should be able to check if pybind11 is installed in this
environment. And if not install pybind11 via
pip install pybind11
and then try to install meshpy via
pip install meshpy
Cheers
Steve
==============================
Emeritus Prof Stephen Roberts
Mathematical Sciences Institute
Hanna Neumann Building #145
The Australian National University
Canberra, ACT 2600 AUSTRALIA
T: +61 2 61254445 | E: ***@***.***
CRICOS Provider: 00120C
________________________________
From: Petar Milevski ***@***.***>
Sent: Wednesday, 24 August 2022 8:19 AM
To: anuga-community/anuga_core ***@***.***>
Cc: Subscribed ***@***.***>
Subject: [anuga-community/anuga_core] pybind11 not installed error (Issue
#24)
Hi Steve, how are you going?
I cloned the latest anuga on my ubuntu 20.04lts box and did sudo bash
anuga_core/tools/install_ubuntu_20_04.sh to install and this error
occurred. Tried this python -m pip install pybind11, it says its installed
but i keep getting the error.
Any ideas??
Building wheel for meshpy (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/petar/anuga_env/bin/python3 -u -c 'import sys, setuptools,
tokenize; sys.argv[0] =
'"'"'/tmp/pip-install-wm9zkzsj/meshpy/setup.py'"'"';
file='"'"'/tmp/pip-install-wm9zkzsj/meshpy/setup.py'"'"';f=getattr(tokenize,
'"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"',
'"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))'
bdist_wheel -d /tmp/pip-wheel-gqp4dbqn
cwd: /tmp/pip-install-wm9zkzsj/meshpy/
Complete output (20 lines):
Pybind11 is not installed.
Very likely, the build process after this message will fail.
Simply press Ctrl+C and type
python -m pip install pybind11
to fix this. If you don't, the build will continue
in a few seconds.
[1] https://pybind11.readthedocs.io/en/stable/<
https://aus01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpybind11.readthedocs.io%2Fen%2Fstable%2F&data=05%7C01%7Cstephen.roberts%40anu.edu.au%7C7a24f2887ca149ff4f4508da8559c7b8%7Ce37d725cab5c46249ae5f0533e486437%7C0%7C0%7C637968917892263914%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=0s82FMADRGmUqZUpbflAtnNrQVRYNch82VVP9fIkvZs%3D&reserved=0
>
Continuing in 1 seconds...
WARNING: The wheel package is not available.
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: setup.py --help [cmd1 cmd2 ...]
or: setup.py --help-commands
or: setup.py cmd --help
error: invalid command 'bdist_wheel'
ERROR: Failed building wheel for meshpy
Running setup.py clean for meshpy
^CERROR: Operation cancelled by user
***@***.***:~$ python -m pip install pybind11
Requirement already satisfied: pybind11 in
./.local/lib/python3.8/site-packages (2.10.0)
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Hi @PetarMilevski ,
Just updated the install_ubuntu_20_04.sh script.
Could you try it again.
Thanks
Steve
Hi Steve I'm working from home until Monday. It's my work PC that has the
issue. Will try it then and gets back to you.
…On Wed, 24 Aug 2022, 16:19 Stephen Roberts, ***@***.***> wrote:
Hi Petar,
Just updated the install_ubuntu_20_04.sh script.
Could you try it again.
Thanks
Steve
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Hi Petar,
I was able to install an ubuntu 22.04 via the wsl system on windows. So at least the installation worked for that system.
Cheers
Steve
Hi Steve that's good to hear. My installs seen to be going ok. I have
noticed the is lots of numbers being printed on the terminal when I first
run the script. Looks like some debug must be set on when the mesh is
created?
On Tue, 11 Oct 2022, 20:17 Stephen Roberts, ***@***.***>
wrote:
… Hi Petar,
I was able to install an ubuntu 22.04 via the wsl system on windows. So at
least the installation worked for that system.
Cheers
Steve
==============================
Emeritus Prof Stephen Roberts
Mathematical Sciences Institute
Hanna Neumann Building #145
The Australian National University
Canberra, ACT 2600 AUSTRALIA
T: +61 2 61254445 | E: ***@***.***
CRICOS Provider: 00120C
________________________________
From: Petar Milevski ***@***.***>
Sent: Tuesday, 11 October 2022 7:29 PM
To: anuga-community/anuga_core ***@***.***>
Cc: Stephen Roberts ***@***.***>; Comment ***@***.***>
Subject: Re: [anuga-community/anuga_core] pybind11 not installed error
(Issue #24)
Hi Steve I'm working from home until Monday. It's my work PC that has the
issue. Will try it then and gets back to you.
On Wed, 24 Aug 2022, 16:19 Stephen Roberts, ***@***.***>
wrote:
> Hi Petar,
>
> Just updated the install_ubuntu_20_04.sh script.
>
> Could you try it again.
>
> Thanks
> Steve
>
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@PetarMilevski is the lots of printout during the install procedure or when you run your own script?
When I'm running a model
…On Tue, 11 Oct 2022, 21:49 Stephen Roberts, ***@***.***> wrote:
@PetarMilevski <https://github.com/PetarMilevski> is the lots of printout
during the install procedure or when you run your own script?
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Seems the installation is now working for 22.04