anniepyim / PCA

3D Visualization of Clustering of Cancer Samples

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3D Visualization of Clustering of Cancer Samples

Require MySQL database for storing expression data, gene data and meta data

Python script:

  • Extract data from MySQL
  • Clustering analysis with scikit-learn
  • Combining meta data
  • Output results in JSON

Javascript:

  • three.js to create 3D visualisation
  • d3.js to create barc harts

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3D Visualization of Clustering of Cancer Samples


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