Utility functions for Reed College Bio331: Computational Systems Biology.
These utility functions are used in Bio331, starting with Lab1. They are wrapper scripts to post graphs to GraphSpace@Reed, a web server for interactive graph sharing and collaboration.
json_utils.pycontains functions to write an annotated graph to a text file in JSON format readable by GraphSpace.graphspace_utils.pycontains curl commands to post the JSON file to GraphSpace.
Auto-generated documentation is available on the Bio331 website under Support Code.
GraphSpace was originally developed at Virginia Tech. It is available at (www.graphspace.org) and the source code is available on the GitHub Page.