Beast code in Giters

Anna (Anya) Parker's repositories

Pipeline components for real-time phylodynamic analysis

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Repository where I evaluate the performance of the ML Tree Builder PhyloFormer on simulated Influenza Data

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Repo for assessing the performance and accuracy of MultiTreeKnit

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This package contains methods for testing the accuracy of the MultiTreeKnit module of TreeKnit.jl

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Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

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Datasets for https://github.com/nextstrain/nextclade

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This is a simple python prototype for a adding a local tree builder into nextclade, currently only using nucleotide values.

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TreeAlgs fork for experimenting with ARG simulations

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WNV - metadata mapping

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