Andy Chen's repositories
10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
AdvML
repository for coursera course "advanced machine learning"
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
awesome-nextflow
A curated list of nextflow based pipelines
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
ChrAccR
Analyzing chromatin accessibility data in R
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
hic
Analysis of Chromosome Conformation Capture data (Hi-C)
HiC_data
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
HiC_tools
A collection of tools for Hi-C data analysis
Lab_2021
Repository for all the labs for Spring 2021
marge
API for HOMER in R for Genomic Analysis using Tidy Conventions
mustache
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
nand2teris
repository for coursera course "From NAND to Teris"
pyflow-ATACseq
ATAC-seq snakemake pipeline
rsd-engineeringcourse
Materials for Turing's Research Software Engineering course
scRNA-seq_notes
A list of scRNA-seq analysis tools
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
sketchat
The project of online discussion room
slurm-examples
examples of using slurm in life sciences workflows using posix file systems and object storage
time-series-predict
Predict power meter usage using seq2seq model