warning and error installing package

Question

warning and error installing package

mgm-cincy opened this issue 5 years ago · comments

When I tried to install the package I got the warning and error message below. When I did sessionInfo() no STRbook package was listed. I pasted my sessionInfo output below the warning.
How can I install the STRbook package?
Thanks,
Mike

install_github("andrewzm/STRbook")
Downloading GitHub repo andrewzm/STRbook@master
1 [main] tar 12456 find_fast_cwd: WARNING: Couldn't compute FAST_CWD pointer. Please report this problem to
the public mailing list cygwin@cygwin.com
cygwin warning:
MS-DOS style path detected: C:\Users\mmcmanus\AppData\Local\Temp\Rtmp0Q8ou4\file3de02cf17642.tar.gz
Preferred POSIX equivalent is: /cygdrive/c/Users/mmcmanus/AppData/Local/Temp/Rtmp0Q8ou4/file3de02cf17642.tar.gz
CYGWIN environment variable option "nodosfilewarning" turns off this warning.
Consult the user's guide for more details about POSIX paths:
http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
Error: Does not appear to be an R package (no DESCRIPTION)

sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] usethis_1.4.0 devtools_2.0.1

loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 rstudioapi_0.9.0 knitr_1.21
[4] magrittr_1.5 pkgload_1.0.2 R6_2.2.2
[7] rlang_0.3.1 tools_3.4.3 pkgbuild_1.0.2
[10] xfun_0.3 sessioninfo_1.1.1 cli_1.0.1
[13] withr_2.1.2 remotes_2.0.2 yaml_2.2.0
[16] assertthat_0.2.0 digest_0.6.16 rprojroot_1.3-2
[19] crayon_1.3.4 processx_3.2.0 callr_2.0.4
[22] fs_1.2.6 ps_1.1.0 curl_3.2
[25] testthat_2.0.0 glue_1.3.0 memoise_1.1.0
[28] compiler_3.4.3 desc_1.2.0 backports_1.1.2
[31] prettyunits_1.0.2

Andrew Zammit Mangion · Answer 1 · Fri May 17 2019 04:08:53 GMT+0800 (China Standard Time)

Hi Mike, I think you have a problem with your devtools installation. Please reinstall devtools and retry. Do you have another machine to try it on? We've had a short course a couple of weeks ago with 40 students who ran that command so I'm pretty sure it's not a problem with the gitbhub page. Regards, Andrew

…

On Fri, May 17, 2019 at 12:20 AM mgm-cincy ***@***.***> wrote: When I tried to install the package I got the warning and error message below. When I did sessionInfo() no STRbook package was listed. I pasted my sessionInfo output below the warning. How can I install the STRbook package? Thanks, Mike install_github("andrewzm/STRbook") Downloading GitHub repo ***@***.*** 1 [main] tar 12456 find_fast_cwd: WARNING: Couldn't compute FAST_CWD pointer. Please report this problem to the public mailing list ***@***.*** cygwin warning: MS-DOS style path detected: C:\Users\mmcmanus\AppData\Local\Temp\Rtmp0Q8ou4\file3de02cf17642.tar.gz Preferred POSIX equivalent is: /cygdrive/c/Users/mmcmanus/AppData/Local/Temp/Rtmp0Q8ou4/file3de02cf17642.tar.gz CYGWIN environment variable option "nodosfilewarning" turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames Error: Does not appear to be an R package (no DESCRIPTION) sessionInfo() R version 3.4.3 (2017-11-30) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) Matrix products: default locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] usethis_1.4.0 devtools_2.0.1 loaded via a namespace (and not attached): [1] Rcpp_1.0.0 rstudioapi_0.9.0 knitr_1.21 [4] magrittr_1.5 pkgload_1.0.2 R6_2.2.2 [7] rlang_0.3.1 tools_3.4.3 pkgbuild_1.0.2 [10] xfun_0.3 sessioninfo_1.1.1 cli_1.0.1 [13] withr_2.1.2 remotes_2.0.2 yaml_2.2.0 [16] assertthat_0.2.0 digest_0.6.16 rprojroot_1.3-2 [19] crayon_1.3.4 processx_3.2.0 callr_2.0.4 [22] fs_1.2.6 ps_1.1.0 curl_3.2 [25] testthat_2.0.0 glue_1.3.0 memoise_1.1.0 [28] compiler_3.4.3 desc_1.2.0 backports_1.1.2 [31] prettyunits_1.0.2 — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1?email_source=notifications&email_token=AABEU3N2YDHU3QAL77L4CVLPVVURPA5CNFSM4HNNBSCKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4GUF5NZQ>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AABEU3NA3HVH4UOLKFNJ5GTPVVURPANCNFSM4HNNBSCA> .

mgm-cincy · Answer 2 · Thu May 23 2019 22:09:57 GMT+0800 (China Standard Time)

Andrew,
I did update and reinstall devtools, but I got the same error. I will try another computer.

Please keep me updated if you offer any future short courses.
Thanks,
Mike

Andrew Zammit Mangion · Answer 3 · Fri May 24 2019 04:13:05 GMT+0800 (China Standard Time)

Hi Mike, Could also be a problem with RTools. Maybe upgrade R and install the new version of RTools too, might fix the problem. Sorry I cannot help much but it's not a problem with the GitHub package I think. Will let you know if we are giving any courses in the future. Regards, Andrew

…

On Fri, 24 May 2019, 00:09 mgm-cincy, ***@***.***> wrote: Andrew, I did update and reinstall devtools, but I got the same error. I will try another computer. Please keep me updated if you offer any future short courses. Thanks, Mike — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#1?email_source=notifications&email_token=AABEU3MS5SR5G36KJ6FU5WTPW2QTLA5CNFSM4HNNBSCKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODWCLAHQ#issuecomment-495235102>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AABEU3PMZSI3BL6F2PSK7VLPW2QTLANCNFSM4HNNBSCA> .

mgm-cincy · Answer 4 · Sat May 25 2019 00:57:49 GMT+0800 (China Standard Time)

I upgraded to R version 3.6.0 and the install went fine.
Thanks,
Mike

Andrew Zammit Mangion · Answer 5 · Sat May 25 2019 04:55:41 GMT+0800 (China Standard Time)

Great, thanks for the update. Regards, Andrew

…

On Sat, 25 May 2019, 02:57 mgm-cincy, ***@***.***> wrote: I upgraded to R version 3.6.0 and the install went fine. Thanks, Mike — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#1?email_source=notifications&email_token=AABEU3N6WJONQJARCTKRRYTPXANA3A5CNFSM4HNNBSCKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODWF647I#issuecomment-495709821>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AABEU3NG4MTSGKRYUSQQHB3PXANA3ANCNFSM4HNNBSCA> .