Andreas Grivas's starred repositories
taskwarrior
Taskwarrior - Command line Task Management
pytorch-crf
(Linear-chain) Conditional random field in PyTorch.
biobert-pretrained
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
hyperbolics
Hyperbolic Embeddings
MedMentions
A corpus of Biomedical papers annotated with mentions of UMLS entities.
bert-chainer
Chainer implementation of "BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding"
python-torchfile
Deserialize Lua torch-serialized objects from Python
pubmed-rct
PubMed 200k RCT dataset: a large dataset for sequential sentence classification.
Named-Entity-Recognition-BidirectionalLSTM-CNN-CoNLL
Keras implementation of "Few-shot Learning for Named Entity Recognition in Medical Text"
graph-2-text
Graph to sequence implemented in Pytorch combining Graph convolutional networks and opennmt-py
Multi-BioNER
Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)
conlleval.py
Python version of the evaluation script from CoNLL'00-
bubble-treemaps
Implementation of Bubble Treemaps for Uncertainty Visualization.
clinical_concept_extraction
Clinical Concept Extraction with Contextual Word Embedding
density-order-emb
Density Order Embeddings
order-embeddings-wordnet
Order-Embeddings for WordNet completion
genia-dependency-trees
Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.
transformative
neural network playground in pytorch