andreas-wilm

local-rag

Ingest files for retrieval augmented generation (RAG) with open-source Large Language Models (LLMs), all without 3rd parties or sensitive data leaving your network.

seqfu2

:rocket: seqfu - Sequece Fastx Utilities

awesome-vdj

📚 Tools and databases for analyzing HLA and VDJ genes.

TCR-BCR-seq-analysis

T/B cell receptor sequencing analysis notes

tcrmodel2

TCRdock

python tools for TCR:peptide-MHC modeling and analysis

shell

A Nim mini DSL to execute shell commands

alan

Alignment viewer for linux terminal

awesome-programming-for-kids

A curated list of resources for teaching kids programming.

tcrdist3

flexible CDR based distance metrics

FlowKit

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

FlowIO

A Python library for reading and writing Flow Cytometry Standard (FCS) files

ckan

CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKAN makes it easy to publish, share and use data. It powers catalog.data.gov, open.canada.ca/data, data.humdata.org among many other sites.

nimpy

Nim - Python bridge

hts-nim

nim wrapper for htslib for parsing genomics data files

lofreq3

LoFreq Version 3

geo-heatmap

:world_map: Generate an interactive geo heatmap from your Google location data

v

Simple, fast, safe, compiled language for developing maintainable software. Compiles itself in <1s with zero library dependencies. Supports automatic C => V translation. https://vlang.io

hls-workshop

krakenSankey

a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser

nimbioseq

Nim Library for sequence (protein/nucleotide) bioinformatics

VariantBam

Filtering and profiling of next-generational sequencing data using region-specific rules

nextflow

A DSL for data-driven computational pipelines

s3gof3r

Fast, concurrent, streaming access to Amazon S3, including gof3r, a CLI. http://godoc.org/github.com/rlmcpherson/s3gof3r

lemonade-stand

A handy guide to financial support for open source

gollum

A simple, Git-powered wiki with a local frontend and support for many kinds of markup and content.

deco

ConfigArgParse

A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.

qtop

qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & grid clusters. At present it supports **PBS, SGE & OAR** families. There is a historic reference for the prior shell version of the tool, at former CERN source:

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.