Andrian's repositories
Language:Python000
flair
Full-Length Alternative Isoform analysis of RNA
Language:PythonNOASSERTION000
mapscvi
Map single cell expression data into a reference scvi latent space and reference umap using R and Seurat. Use included objects to map new data to HypoMap.
Language:Jupyter NotebookNOASSERTION000
ncss-coffeerun
NCSS Coffeerun website
ncss-murder
A rewrite of the ncss murder website using python and tornado
Language:PythonMIT000
sarlacc
The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
Language:R000
TissueTag
Python package to interactively annotate histological images within a jupyter notebook
Language:Jupyter NotebookBSD-3-Clause000
vireo
Demultiplexing pooled scRNA-seq data without genotype reference
Language:PythonApache-2.0000