amsszlh

amsszlh

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scMC

R package for integrating and comparing multiple single cell genomic datasets

scAI

An unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles

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CSMF

Simultaneously learning Common and Specific patterns via Matrix Factorization

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DIRECT-NET

Inferring CREs and constructing regulatory networks from single cell multi-omics data

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JMF

A general joint matrix factorization framework for data integration

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Linkseq

R package for characterizing transcriptional regulation code using single cell multiomis data

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MAESTRO

Single-cell Transcriptome and Regulome Analysis Pipeline

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PBLR

An effective tool for imputing scRNA-seq data

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seurat-disk

Interfaces for HDF5-based Single Cell File Formats

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signac

R toolkit for the analysis of single-cell chromatin data

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