A snakemake pipeline for classifying (kraken), de novo assemblying (haploflow) and annotating (abricate) viral Illumina data.
- Classify with Kraken2 + minikraken
- de novo assembly with Haploflow
- Annotate with Abricate
To do
To do
A snakemake pipeline for classifying (kraken), de novo assemblying (haploflow) and annotating (abricate) pipeline
A snakemake pipeline for classifying (kraken), de novo assemblying (haploflow) and annotating (abricate) viral Illumina data.
To do
To do
A snakemake pipeline for classifying (kraken), de novo assemblying (haploflow) and annotating (abricate) pipeline
MIT License