NER-classes: Where to find definitions?
raven44099 opened this issue · comments
Hi, I'm an enthusiastic user of your library!
On your website you state that there is a GGP class in this dataset.
| Model | F1 | Entity Types |
|---|---|---|
| en_ner_craft_md | 77.56 | GGP, SO, TAXON, CHEBI, GO, CL |
However, The original CRAFT-paper doesn't have this class:
| Terminology | Total Annotations |
|---|---|
| ChEBI | 8,137 |
| CL | 5,760 |
| Entrez Gene | 12,277 |
| GO BPa | 16,184 |
| GO CC | 8,354/4,707b |
| GO MF | 4,062 |
| NCBITaxonc | 7,449 |
| PRO | 15,594 |
| SOd | 22,090 |
| All | 99,907 |
I tried to find the mapping, but was not successful. Where can I find information about the definitions of the classes used for your NER models?
- en_ner_craft_md
- en_ner_jnlpba_md
- en_ner_bc5cdr_md
- en_ner_bionlp13cg_md
I believe this should contain the information you are looking for: https://github.com/cambridgeltl/MTL-Bioinformatics-2016/blob/master/Additional%20file%201.pdf. GGP specifically is gene/gene-product