AlexVCaron

nft-nifti

nf-scil

SCIL Nextflow Toolbox

setup-nf-test

versaFlow

versaFlow is an automated multi-resolution diffusion MRI processing pipeline implemented in Nextflow.

mrHARDIflow

mrHARDI is an automated multi-resolution diffusion MRI processing pipeline implemented in Nextflow.

scilpy

The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

mrHARDI

Multi-usage python library for processing and modeling of diffusion MRI images. For pipelining tools, see mrHARDIflow at https://github.com/AlexVCaron/mrHARDIflow.

containers-scilus

Files needed to build a container to run all scilus flows.

nextflow-website

Nextflow public web site

nf-tractoflow

website

Code and files for the main nf-core website.

nf-core-tools

Python package with helper tools for the nf-core community.

AlexVCaron.github.io

nf-core-modules

nf-scil modules repository

nf-neuro

fury

FURY - Free Unified Rendering in pYthon.

dvc-data

DVC's data management subsystem

container_workshop

scil-documentation

Documentation for the SCIL

scilpypi

Scilpy building and PyPI publishing tools

nf-scil-fibercup

new repository for fiber cup

dmriqcpy

Diffusion MRI Quality Check in python

tractoflow

TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

versutils

dmriqc_flow

A Nextflow pipeline for diffusion MRI quality check

nf-mri-modules

Repository storing Nextflow modules definitions for popular and state-of-the-art MRI processing technologies

bundle_mpc

scilpy-requirements-frozen

longitudinal_image_statistics

Short script to compute stability statistics on image timeseries of a group of subjects. Available statistics are : intra and inter subject variation and pearson correlation coefficients, I2C2 coefficient. Bootstrapping is available for variation coefficient and I2C2.

voxsim