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RNA-seq aligner

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--soloFeatures when analysing snRNA

onmyojiyys opened this issue · comments

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If I am analyzing snRNA and set the parameter to --soloFeatures Gene GeneFull_Ex50pAS, would the resulting BAM file be the same as if I only set --soloFeatures GeneFull_Ex50pAS? If I want to manually count the median gene number from the BAM file including introns, which parameter setting should I use?