Feature request for --quantTranscriptomeBan

[Danny Incarnato]

Dear Alex,

hope you are well.
I am writing to ask whether it would be possible to add to the --quantTranscriptomeBan parameter the option None, so that no alignment will be banned/discarded.
For instance, in some cases it can be useful to pre-merge R1 and R2 using tools such as PEAR, which would lead to all alignments being single end.

Thanks in advance!

Cheers,
Danny

[Danny Incarnato]

I actually now see that the option has been superseded by quantTranscriptomeSAMoutput, sorry for that.