Help for option to output geneBiotype from `geneInfo.tab` to `features.tsv`.
galaxy001 opened this issue · comments
$ head -n6 genome/geneInfo.tab
332285
ENSMUSG00000051951 Xkr4 protein_coding
ENSMUSG00000089699 Gm1992 lncRNA
ENSMUSG00000102331 Gm19938 lncRNA
ENSMUSG00000102343 Gm37381 lncRNA
ENSMUSG00000025900 Rp1 protein_coding
$ head -n6 features.tsv
ENSMUSG00000051951 Xkr4 Gene Expression
ENSMUSG00000089699 Gm1992 Gene Expression
ENSMUSG00000102331 Gm19938 Gene Expression
ENSMUSG00000102343 Gm37381 Gene Expression
ENSMUSG00000025900 Rp1 Gene Expression
ENSMUSG00000025902 Sox17 Gene Expression
soloOutFormatFeaturesGeneField3
can only set field3 to a fixed string, it is helpful to copy the original biotype.
Would you make --soloOutFormatFeaturesGeneField3 COPY
or sth. like this ?