genomeParameters.txt not found
EmanAbda opened this issue · comments
the output of STAR lacks genomeParameters.txt so i cannot run the next code for mapping and i tried the solution in #569 , it didnot work
this is a code
STAR --runMode genomeGenerate --genomeFastaFiles /home/eman/Downloads/long/Reference/GRCm39.genome.fa --sjdbGTFfile /home/eman/Downloads/long/Reference/gencode.vM34.long_noncoding_RNAs.gtf --sjdbOverhang 100 --runThreadN 3
this is log.out file
Log.out.txt
free -g
total used free shared buff/cache available
Mem: 8 1 4 0 1 6
Swap: 1 0 1
It looks like you have 8GB of RAM, this is not enough for mouse genome - you need at least 16GB.