Alexandre Gilardet's repositories
Matis_plink
plinkPy takes .ped and .map files exported from Plink as input. After parsing of both files into a single object in an OOP-manner, it allows to extract part of the data and export it back into .ped and .map files as well as csv, genepop and structure formats.
bactmap
WIP: A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Language:NextflowMIT000
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell000
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Language:NextflowMIT000
Matis_database
Design of a sqlite3 database for SNP data from salmon and herring
Language:Python000
Matis_salmon
Programs to treat population genomics SNP data
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:NextflowMIT000
multi-package-containers
Testing building mulled containers for multi-requirement tools.
000