alegione

NBA-Game-Of-The-Day

A shiny web application that ranks daily NBA games for your viewing pleasure

alegione.github.io

The academic website of Dr Alistair Legione

alegione.github.io_old

My personal website

bash-pipelines

A bunch of bash scripts, R scripts that they use, and other docs. Many are computer specific and not useful for others.

Lab_calculators

A collection of R shiny apps for various calculators

MAGsim

Scripts for testing several alignment tools for metagenomic assemblies

NanoDropPlotter

A tool to view multiple NanoDrop results

pydeel

R-web-scrape

ScholarPlot

Shiny web tool for visualising and exporting google scholar data

biodemo

A demo project (melbourne bioinformatics workshop)

CodonShuffle

DivProPipe

DumplingSquid

Classify metagenomic reads based on miniture databases

homebrew-bioinformatics-linux

:beer: :penguin: Homebrew formulae for bioinformatics software only available for Linux

HPC_classifier

A place to put scripts for classification of long reads using the Unimelb Spartan high performance computer

HPCshells

Advanced Linux commands, regular expressions, shell scripting, and their integration into SLURM scripts.

ideel

Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes

MapGraph

Some scripts for plotting depth of read coverage against references

MicroLabR

A complilation of tools useful for a microbiology laboratory

office-macros

A collection of macros for microsoft office

pharokka-gcode

fast phage annotation program

Porechop

adapter trimmer for Oxford Nanopore reads

PythonTraining

qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

simple_site

Minimal tutorial on making a simple website with GitHub Pages

srst2

Short Read Sequence Typing for Bacterial Pathogens

Trycycler

A tool for generating consensus long-read assemblies for bacterial genomes

Unicycler-gcode

hybrid assembly pipeline for bacterial genomes

Vet_Help

Calculation tools for vets