Missing prediction file
zhichusun opened this issue · comments
#classifying
Args <- commandArgs(TRUE)
library(randomForest)
randomForest 4.6-14
Type rfNews() to see new features/changes/bug fixes.
model<-paste(Args[2],"/",Args[1],".rfo",sep="")
load(model)
df<-read.table("outputdataframe.csv", sep=",", header=T, row.names=1)
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :
line 68 did not have 1034 elements
Calls: read.table -> scan
Execution halted
Prediction done
When I run more than 400 genomes, I can't generate the prediction file at the end, only the outdateframe.csv file, what's going on?
checkm has an issue with very large datasets, although normally that is an issue with ~1000 genomes or so. I think you need to analyze it per 200 maybe?