Aine Fairbrother-Browne's repositories
ensemblQueryR
Package allowing easy integration of Ensembl querying with your R workflow
MitoNuclear_coexpression_pipeline
Pipeline to produce mitochondrial-nuclear correlation matrices from TPM matrices
GenBank-parser
This is a parser written to extract data from a GenBank file and insert it into an SQL database. This is part of a project that I did for my MSc in Bioinformatics.
Hackathon19_visualise_ontology
Repository for the 2019 IPDGC Hackathon project aimed at visualising gene ontology analysis results
MitoNuclearCOEXPlorer
Platform that allows querying of mitochondrial-nuclear co-expression data, developed using Shiny
useful-bioinformatics-functions
This repo contains useful functions for doing typical bioinformatics tasks that I have developed during my PhD, and generalised here to make them useful to others.
AMPPD_eQTL_meQTL_pipeline
Pipeline used to process raw AMP-PD data and run downstream (meQTL/ eQTL) analyses.
ghost_flights
Code to accompany my Towards Data Science article "Scrutinising airline efficiency by visualising public aviation data"
kaggle_titanic_survival
Kaggle Titanic survival challenge
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
RBP_expression_analysis
Cross-tissue RBP expression analysis for the following publication: "Splicing accuracy varies across human introns, tissues and age"