agdenadel

judson-abstract-algebra-solutions

Resources

aaptx

agdenadel.github.io

Build a Jekyll blog in minutes, without touching the command line.

arxiv-sanity-preserver

Web interface for browsing, search and filtering recent arxiv submissions

backpack

BackPACK - a backpropagation package built on top of PyTorch which efficiently computes quantities other than the gradient.

CHOIR

CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)

contrastive

Contrastive PCA

DESeq2

Differential gene expression analysis based on the negative binomial distribution

genomicspapers

The Leek group guide to genomics papers

infercnv

Inferring CNV from Single-Cell RNA-Seq

kallistobustools

kallisto|bustools workflow for pre-processing single-cell RNA-seq data

MFASS

Code to run analysis in "A Multiplexed Assay for Exon Recognition Reveals that an Unappreciated Fraction of Rare Genetic Variants Cause Large-Effect Splicing Disruptions"

numerics

nupic

Numenta Platform for Intelligent Computing is an implementation of Hierarchical Temporal Memory (HTM), a theory of intelligence based strictly on the neuroscience of the neocortex.

PosteriorPlots.jl

Graphical tools for Bayesian inference and posterior predictive checks.

REcount

Code for analyzing REcount barcode sequencing data.

seurat

R toolkit for single cell genomics

Seurat-Tutorial

sublime-customization

zero-shot-scfoundation