Adriane Feijó Evangelista's repositories
biopython
Official git repository for Biopython (originally converted from CVS)
dcc-repository
Importer for the ICGC "Data Repository" feature which imports file metadata from various external data repositories.
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
SBCAS-2020
Code used for the paper presented at SBCAS-2020
Seqware-BWA-Workflow
This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
ZevRTricks
Next Gen Seq and Plotting