AdrianBZG

LLM-distributed-finetune

Tune efficiently any LLM model from HuggingFace using distributed training (multiple GPU) and DeepSpeed. Uses Ray AIR to orchestrate the training on multiple AWS GPU instances

Polyglotter

Code for "Translating synthetic natural language to database queries: a polyglot deep learning framework" (Nature Scientific Reports, 2021)

llama-multimodal-vqa

Multimodal Instruction Tuning for Llama 3

HyperBERT

Code for "HyperBERT: Mixing Hypergraph-Aware Layers with Language Models for Node Classification on Text-Attributed Hypergraphs"

Muscular-Dystrophy-Diagnosis

Code for "A Convolutional Neural Network for the automatic diagnosis of collagen VI-related muscular dystrophies" (Applied Soft Computing, 2019)

SQLformer

Code for "SQLformer: Deep Auto-Regressive Query Graph Generation for Text-to-SQL Translation"

InterMine-Data-Browser-Tool

InterMine Data Browser: a tool for exploring semi-homogeneous biological datasets

SFAVEL

Code for "Unsupervised Pretraining for Fact Verification by Language Model Distillation" (ICLR 2024)

CancerTargetPrediction

Code for the manuscript "Genome-wide investigation of gene-cancer associations for the prediction of novel therapeutic targets in oncology"

outreachy-opennmt-task

bluegenes-depmap-cnv-visualizer

Visualizer for DepMap Copy Number Variation data per lineage for BlueGenes

bluegenes-depmap-expression-visualizer

Visualizer for DepMap mRNA expression data per lineage for BlueGenes

personal_website

My personal website, deployed using Docker

storm-bio-sources

tinyroberta-distillation-qa-es

Code for "Language Model Knowledge Distillation for Efficient Question Answering in Spanish" (ICLR 2024 Tiny Papers)

adrianbzg.github.io

Personal website

bluegenes-depmap-screens-visualization

bluegenes-protein-atlas-tissue-expression-visualizer

bluegenes-protein-visualizer

ggnomics

A small project to add ggplot2 extensions

Graph-Transformer

Transformer for Graph Classification (in Pytorch and Tensorflow)

humanmine-bio-sources

Data sources for HumanMine

intermine-general-converter

A prototype tool/script for automatically creating Java converter code for the InterMine software from a given configuration file

mimic-sparql

pterodactyl-images

Generic docker containers designed to work with Pterodactyl Panel and its daemon.

pytorch-lightning

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate.

sentence-transformers

Multilingual Sentence & Image Embeddings with BERT

TabPFN

Official implementation of the TabPFN paper (https://arxiv.org/abs/2207.01848) and the tabpfn package.

ubuntu-mainline-kernel.sh

Bash script for Ubuntu (and derivatives) to easily (un)install kernels from the Ubuntu Kernel PPA

yale-lily.github.io